CHRONOS

DOI: 10.18129/B9.bioc.CHRONOS    

This is the development version of CHRONOS; for the stable release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: Development (3.9)

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("CHRONOS", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

 

PDF R Script CHRONOS
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version 1.11.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL-2
Depends R (>= 3.5)
Imports XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements Java version >= 1.7, Pandoc
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHRONOS_1.11.0.tar.gz
Windows Binary CHRONOS_1.11.0.zip
Mac OS X 10.11 (El Capitan) CHRONOS_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CHRONOS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHRONOS
Package Short Url http://bioconductor.org/packages/CHRONOS/
Package Downloads Report Download Stats

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