To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CHRONOS")

In most cases, you don't need to download the package archive at all.

CHRONOS

DOI: 10.18129/B9.bioc.CHRONOS    

This is the development version of CHRONOS; for the stable release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: Development (3.7)

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CHRONOS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

 

PDF R Script CHRONOS
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version 1.7.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL-2
Depends R (>= 3.3)
Imports XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements Java version >= 1.7, Pandoc
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHRONOS_1.7.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) CHRONOS_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CHRONOS
Package Short Url http://bioconductor.org/packages/CHRONOS/
Package Downloads Report Download Stats

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