DOI: 10.18129/B9.bioc.BiocOncoTK    

This is the development version of BiocOncoTK; for the stable release version, see BiocOncoTK.

Bioconductor components for general cancer genomics

Bioconductor version: Development (3.8)

Provide a central interface to various tools for genome-scale analysis of cancer studies.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("BiocOncoTK")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("BiocOncoTK", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script BiocOncoTK -- cancer oriented components for Bioconductor
PDF   Reference Manual


biocViews CopyNumberVariation, CpGIsland, DNAMethylation, GeneExpression, GeneticVariability, SNP, Software, Transcription
Version 1.1.19
License Artistic-2.0
Depends R (>= 3.5.0), methods
Imports ComplexHeatmap, S4Vectors, bigrquery, shiny, stats, httr, rjson, dplyr, magrittr, grid, utils, DT, GenomicRanges, IRanges, ggplot2, SummarizedExperiment
Suggests knitr, dbplyr, DBI,, MultiAssayExperiment, BiocStyle, ontoProc, ontologyPlot, pogos, GenomeInfoDb, restfulSE(>= 1.3.7), BiocFileCache, TxDb.Hsapiens.UCSC.hg19.knownGene, Biobase, TxDb.Hsapiens.UCSC.hg18.knownGene, reshape2, testthat, AnnotationDbi
Depends On Me
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Source Package BiocOncoTK_1.1.19.tar.gz
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Mac OS X 10.11 (El Capitan) BiocOncoTK_1.1.19.tgz
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