BiocOncoTK

DOI: 10.18129/B9.bioc.BiocOncoTK    

This is the development version of BiocOncoTK; for the stable release version, see BiocOncoTK.

Bioconductor components for general cancer genomics

Bioconductor version: Development (3.8)

Provide a central interface to various tools for genome-scale analysis of cancer studies.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocOncoTK")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("BiocOncoTK", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocOncoTK")

 

HTML R Script BiocOncoTK -- cancer oriented components for Bioconductor
PDF   Reference Manual

Details

biocViews CopyNumberVariation, CpGIsland, DNAMethylation, GeneExpression, GeneticVariability, SNP, Software, Transcription
Version 1.1.6
License Artistic-2.0
Depends R (>= 3.5.0), methods
Imports ComplexHeatmap, S4Vectors, bigrquery, shiny, httr, rjson, dplyr, magrittr, grid, utils, DT, GenomicRanges, IRanges
LinkingTo
Suggests knitr, dbplyr, DBI, org.Hs.eg.db, MultiAssayExperiment, BiocStyle, ontoProc, ontologyPlot, pogos, ggplot2, GenomeInfoDb, restfulSE(>= 1.3.1), BiocFileCache, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg18.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocOncoTK_1.1.6.tar.gz
Windows Binary BiocOncoTK_1.1.6.zip
Mac OS X 10.11 (El Capitan) BiocOncoTK_1.1.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocOncoTK
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocOncoTK
Package Short Url http://bioconductor.org/packages/BiocOncoTK/
Package Downloads Report Download Stats

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