BioNetStat

DOI: 10.18129/B9.bioc.BioNetStat    

This is the development version of BioNetStat; for the stable release version, see BioNetStat.

Biological Network Analysis

Bioconductor version: Development (3.8)

A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.

Author: Vinícius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge

Maintainer: Vinicius Jardim <viniciusjc at gmail.com>

Citation (from within R, enter citation("BioNetStat")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("BioNetStat", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioNetStat")

 

HTML 1. Line command tutorial
HTML 2. Interface tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology
Version 1.1.1
License GPL (>= 3)
Depends R (>= 3.5), shiny, igraph, shinyBS, pathview
Imports BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://github.com/jardimViniciusC/BioNetStat
BugReports http://github.com/jardimViniciusC/BioNetStat/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioNetStat_1.1.1.tar.gz
Windows Binary BioNetStat_1.1.1.zip
Mac OS X 10.11 (El Capitan) BioNetStat_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioNetStat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioNetStat
Package Short Url http://bioconductor.org/packages/BioNetStat/
Package Downloads Report Download Stats

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