DOI: 10.18129/B9.bioc.BgeeDB    

This is the development version of BgeeDB; for the stable release version, see BgeeDB.

Annotation and gene expression data retrieval from Bgee database

Bioconductor version: Development (3.7)

A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.

Author: Andrea Komljenovic [aut, cre], Julien Roux [aut, cre]

Maintainer: Julien Wollbrett <julien.wollbrett at>, Julien Roux <julien.roux at>, Andrea Komljenovic <andreakomljenovic at>, Frederic Bastian <bgee at>

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biocViews DataImport, GO, GeneExpression, GeneSetEnrichment, Microarray, Sequencing, Software
Version 2.5.0
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License GPL-2
Depends R (>= 3.3.0), topGO, tidyr
Imports data.table, RCurl, digest, methods, stats, utils, dplyr, graph, Biobase
Suggests knitr, BiocStyle, testthat, rmarkdown
Depends On Me
Imports Me psygenet2r, RITAN
Suggests Me
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Source Package BgeeDB_2.5.0.tar.gz
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Mac OS X 10.11 (El Capitan) BgeeDB_2.5.0.tgz
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