To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("BgeeDB")

In most cases, you don't need to download the package archive at all.

BgeeDB

 

   

This is the development version of BgeeDB; for the stable release version, see BgeeDB.

Annotation and gene expression data retrieval from Bgee database

Bioconductor version: Development (3.6)

A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.

Author: Andrea Komljenovic [aut, cre], Julien Roux [aut, cre]

Maintainer: Julien Wollbrett <julien.wollbrett at unil.ch>, Julien Roux <julien.roux at unibas.ch>, Andrea Komljenovic <andreakomljenovic at gmail.com>, Frederic Bastian <bgee at sib.swiss>

Citation (from within R, enter citation("BgeeDB")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("BgeeDB")

Documentation

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, GO, GeneExpression, GeneSetEnrichment, Microarray, Sequencing, Software
Version 2.3.3
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL-2
Depends R (>= 3.3.0), topGO, tidyr
Imports data.table, RCurl, digest, methods, stats, utils, dplyr, graph, Biobase
LinkingTo
Suggests knitr, BiocStyle, testthat, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me psygenet2r
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BgeeDB_2.3.3.tar.gz
Windows Binary BgeeDB_2.3.3.zip
Mac OS X 10.11 (El Capitan) BgeeDB_2.3.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BgeeDB
Package Short Url http://bioconductor.org/packages/BgeeDB/
Package Downloads Report Download Stats

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