BCRANK

DOI: 10.18129/B9.bioc.BCRANK    

This is the development version of BCRANK; for the stable release version, see BCRANK.

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Development (3.8)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("BCRANK", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF R Script BCRANK
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.43.0
In Bioconductor since BioC 2.2 (R-2.7) (10 years)
License GPL-2
Depends methods
Imports Biostrings
LinkingTo
Suggests seqLogo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BCRANK_1.43.0.tar.gz
Windows Binary BCRANK_1.43.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) BCRANK_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BCRANK
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BCRANK
Package Short Url http://bioconductor.org/packages/BCRANK/
Package Downloads Report Download Stats

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