BCRANK

DOI: 10.18129/B9.bioc.BCRANK    

This is the development version of BCRANK; for the stable release version, see BCRANK.

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Development (3.9)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BCRANK", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF R Script BCRANK
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.45.0
In Bioconductor since BioC 2.2 (R-2.7) (10.5 years)
License GPL-2
Depends methods
Imports Biostrings
LinkingTo
Suggests seqLogo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me universalmotif
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BCRANK_1.45.0.tar.gz
Windows Binary BCRANK_1.45.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) BCRANK_1.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BCRANK
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BCRANK
Package Short Url http://bioconductor.org/packages/BCRANK/
Package Downloads Report Download Stats

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