DOI: 10.18129/B9.bioc.AneuFinder    

This is the development version of AneuFinder; for the stable release version, see AneuFinder.

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Bioconductor version: Development (3.7)

AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.

Author: Aaron Taudt, Bjorn Bakker, David Porubsky

Maintainer: Aaron Taudt <aaron.taudt at>

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PDF R Script A quick introduction to AneuFinder
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biocViews CopyNumberVariation, GenomicVariation, HiddenMarkovModel, Sequencing, SingleCell, Software, WholeGenome
Version 1.7.4
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License Artistic-2.0
Depends R (>= 3.3), GenomicRanges, cowplot, AneuFinderData
Imports methods, utils, grDevices, graphics, stats, foreach, doParallel, S4Vectors, GenomeInfoDb, IRanges, Rsamtools, bamsignals, DNAcopy, ecp, Biostrings, GenomicAlignments, ggplot2, reshape2, ggdendro, ggrepel, ReorderCluster, mclust
Suggests knitr, BiocStyle, testthat, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10
Depends On Me
Imports Me
Suggests Me
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