To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ASpli")

In most cases, you don't need to download the package archive at all.

ASpli

 

This is the development version of ASpli; for the stable release version, see ASpli.

Analysis of alternative splicing using RNA-Seq

Bioconductor version: Development (3.6)

Integrative pipeline for the analysis of alternative splicing using RNA-seq.

Author: Estefania Mancini, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Estefania Mancini <emancini at leloir.org.ar>

Citation (from within R, enter citation("ASpli")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ASpli")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

 

PDF R Script Analysis of alternative splicing using ASpli
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version 1.3.1
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL
Depends methods, GenomicRanges, GenomicFeatures, edgeR, BiocGenerics, IRanges, GenomicAlignments, DESeq2, DEXSeq, Gviz, grDevices, stats, utils, S4Vectors, AnnotationDbi, parallel
Imports
LinkingTo
Suggests RNAseqData.HNRNPC.bam.chr14, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ASpli_1.3.1.tar.gz
Windows Binary ASpli_1.3.1.zip
Mac OS X 10.11 (El Capitan) ASpli_1.3.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ASpli
Package Short Url http://bioconductor.org/packages/ASpli/
Package Downloads Report Download Stats

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