ASICS

DOI: 10.18129/B9.bioc.ASICS    

This is the development version of ASICS; for the stable release version, see ASICS.

Automatic Statistical Identification in Complex Spectra

Bioconductor version: Development (3.8)

With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) .

Author: Gaëlle Lefort [aut, cre], Rémi Servien [aut], Patrick Tardivel [aut], Nathalie Villa-Vialaneix [aut]

Maintainer: Gaëlle Lefort <gaelle.lefort at inra.fr>

Citation (from within R, enter citation("ASICS")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("ASICS", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASICS")

 

HTML R Script ASICS
HTML R Script ASICS
PDF   Reference Manual
Text   NEWS

Details

biocViews Cheminformatics, DataImport, Metabolomics, Software
Version 1.1.0
License GPL (>= 2)
Depends R (>= 3.5)
Imports BiocParallel, ggplot2, grDevices, gridExtra, methods, plyr, quadprog, ropls, speaq, stats, SummarizedExperiment, utils, zoo
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat, ASICSdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASICS_1.1.0.tar.gz
Windows Binary ASICS_1.1.0.zip
Mac OS X 10.11 (El Capitan) ASICS_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASICS
Package Short Url http://bioconductor.org/packages/ASICS/
Package Downloads Report Download Stats

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