To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AMOUNTAIN")

In most cases, you don't need to download the package archive at all.

AMOUNTAIN

 

   

This is the development version of AMOUNTAIN; for the stable release version, see AMOUNTAIN.

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Bioconductor version: Development (3.6)

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

Author: Dong Li, Shan He, Zhisong Pan and Guyu Hu

Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>

Citation (from within R, enter citation("AMOUNTAIN")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("AMOUNTAIN")

Documentation

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PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Network, Software
Version 1.3.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License GPL (>= 2)
Depends R (>= 3.3.0)
Imports stats
LinkingTo
Suggests BiocStyle, qgraph, knitr, rmarkdown
SystemRequirements gsl
Enhances
URL
Depends On Me
Imports Me MODA
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AMOUNTAIN_1.3.0.tar.gz
Windows Binary AMOUNTAIN_1.3.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) AMOUNTAIN_1.3.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AMOUNTAIN
Package Short Url http://bioconductor.org/packages/AMOUNTAIN/
Package Downloads Report Download Stats

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